PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67250.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 272aa    MW: 30859.7 Da    PI: 10.1193
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67250.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.96.7e-52161591128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk................kvkaeekewyfFskrdkkyatgkrknratksg 81 
                   +ppGfrFhPt+eelv +yL++kv+++k++l ++i+evd+y++ePwdL++                + +++++ewyfFs +d+ky+tg+r+nrat++g
  MLOC_67250.4  16 VPPGFRFHPTEEELVGYYLARKVAAQKIDL-DIIQEVDLYRIEPWDLQAercgggrggrgarqapEDDQTSSEWYFFSFKDRKYPTGTRTNRATAAG 111
                   69****************************.99**************9558999999988775442223445************************* PP

           NAM  82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   +Wkatg+dk+v+s+ ++ ++g++ktLvfy+grap+g+ktdW++heyrl
  MLOC_67250.4 112 FWKATGRDKPVTSSrSRGVIGMRKTLVFYTGRAPNGRKTDWIIHEYRL 159
                   ************9856678***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-528169IPR003441NAC domain
PROSITE profilePS5100551.41116187IPR003441NAC domain
PfamPF023653.8E-2717159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MLAMEQQHHE QEESCVPPGF RFHPTEEELV GYYLARKVAA QKIDLDIIQE VDLYRIEPWD  60
LQAERCGGGR GGRGARQAPE DDQTSSEWYF FSFKDRKYPT GTRTNRATAA GFWKATGRDK  120
PVTSSRSRGV IGMRKTLVFY TGRAPNGRKT DWIIHEYRLQ TNEHAPTQVP NSSLLHPPSP  180
SCREFVVDDH DHGYDVAGGR LGGVPCVPEA NPEPETVLHL PRIRRRPGSR RLLRHAAVAA  240
ARPSRRPPFP AERQRGYGSR RPRFPRPGHP VL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-4721851166Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3677890.0AK367789.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062C13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650248.12e-84PREDICTED: NAC domain-containing protein 105
SwissprotQ9SL412e-69NAC37_ARATH; NAC domain-containing protein 37
TrEMBLM0YAD00.0M0YAD0_HORVD; Uncharacterized protein
STRINGMLOC_67250.11e-106(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.14e-58vascular related NAC-domain protein 1